STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUB0862ABC-type glycine betaine transport system ATP-binding protein. (242 aa)    
Predicted Functional Partners:
SUB0863
ABC-type glycine betaine transport system protein.
 0.999
SUB0861
MarR family regulatory protein.
  
  
 0.825
SUB0860
Zinc-binding dehydrogenase.
  
    0.805
SUB0738
Putative permease.
 
      0.675
SUB1717
Putative glycine-betaine binding permease protein.
 
  
 0.600
SUB0859
Haloacid dehalogenase-like hydrolase.
       0.510
SUB0864
Putative 6-phospho-beta-glucosidase; Belongs to the glycosyl hydrolase 1 family.
       0.496
SUB1302
ABC transporter, ATP-binding/permease protein.
 
     
0.433
SUB0858
Conserved hypothetical protein.
       0.406
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.