STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUB0899Putative phage repressor-like protein. (230 aa)    
Predicted Functional Partners:
SUB0898
impB/mucB/samB family; Belongs to the DNA polymerase type-Y family.
 
     0.823
SUB0896
Hypothetical protein.
       0.800
SUB0897
Hypothetical protein.
       0.800
SUB0099
Pyridoxamine 5'-phosphate oxidase protein.
  
     0.641
SUB0478
Putative membrane protein.
  
     0.568
SUB1800
Conserved hypothetical protein.
  
    0.562
SUB0900
Putative oxidoreductase.
       0.493
SUB1690
MarR family regulatory protein.
  
  
 0.487
SUB0464
Conserved hypothetical protein; Possible alternative upstream translational start site.
  
     0.452
xerD
Tyrosine recombinase XerD; Putative tyrosine recombinase. Not involved in the cutting and rejoining of the recombining DNA molecules on dif(SL) site. Belongs to the 'phage' integrase family. XerD-like subfamily.
 
  
 0.405
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.