Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
SUB0904rpiR-family regulatory protein. (289 aa)    
Predicted Functional Partners:
SUB1541
RpiR family regulatory protein.
  
   
 0.832
SUB1650
Putative transcription regulator.
  
     0.763
SUB0806
Putative integrase (pseudogene); HMMPfam hit to PF00589, Phage integrase family, score 1.7e-10.
 
  
 0.628
SUB0905
6-phospho-beta-glucosidase 6; Similar to SUB0841, 59.158% identity (59.408% ungapped) in 475 aa overlap (6-480:4-476); and SUB0200, 49.465% identity (49.677% ungapped) in 467 aa overlap (8-474:7-471); and SUB0837, 50.103% identity (51.695% ungapped) in 487 aa overlap (6-479:3-487); and SUB1579, 47.551% identity (49.260% ungapped) in 490 aa overlap (1-479:1-484); and SUB0834, 46.800% identity (49.893% ungapped) in 500 aa overlap (5-480:3-495); and SUB0309, 45.155% identity (47.198% ungapped) in 485 aa overlap (11-480:7-485); Belongs to the glycosyl hydrolase 1 family.
  
    0.547
SUB0236
Putative glucose-specific phosphotransferase system (PTS), IIABC component.
  
  
 0.415
SUB0830
Transcription antiterminator (pseudogene); HMMPfam hit to PF00874, PRD domain, score 2.1e-14.
  
  
 0.415
scrA
Putative sucrose-specific phosphotransferase system (PTS), IIABC component.
  
  
 0.415
SUB1763
Sugar phosphotransferase system (PTS), IIABC component.
  
  
 0.415
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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