STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUB0906Conserved hypothetical protein; Possible gene remnant. Similar to the C-terminal region of Bacillus halodurans BH2720 protein UniProt:Q9K9C9_BACHD (EMBL:BA000004) (295 aa) fasta scores: E()=3.2e-28, 59.701% id in 134 aa, and to the full length Rhizobium loti (Mesorhizobium loti) MLL6738 protein UniProt:Q988H6_RHILO (EMBL:BA000012) (137 aa) fasta scores: E()=2.4e-15, 42.636% id in 129 aa. (140 aa)    
Predicted Functional Partners:
SUB0905
6-phospho-beta-glucosidase 6; Similar to SUB0841, 59.158% identity (59.408% ungapped) in 475 aa overlap (6-480:4-476); and SUB0200, 49.465% identity (49.677% ungapped) in 467 aa overlap (8-474:7-471); and SUB0837, 50.103% identity (51.695% ungapped) in 487 aa overlap (6-479:3-487); and SUB1579, 47.551% identity (49.260% ungapped) in 490 aa overlap (1-479:1-484); and SUB0834, 46.800% identity (49.893% ungapped) in 500 aa overlap (5-480:3-495); and SUB0309, 45.155% identity (47.198% ungapped) in 485 aa overlap (11-480:7-485); Belongs to the glycosyl hydrolase 1 family.
       0.523
SUB0908
NADPH-dependent FMN reductase; C-terminus is similar to the C-terminal region of Shewanella oneidensis fumarate reductase flavoprotein subunit precursor UniProt:FRDA_SHEON (EMBL:AE015541) (596 aa) fasta scores: E()=7.7e-27, 34.972% id in 529 aa. N-terminus is similar to SUB1685, 50.794% identity (51.064% ungapped) in 189 aa overlap (1-189:1-188); and the N-terminal region of SUB1686, 50.877% identity (51.786% ungapped) in 228 aa overlap (1-224:1-228).
     
 0.491
SUB1038
Putative glycosyl-1-phosphate-transferase.
  
  
 0.480
SUB0907
NADPH-dependent FMN reductase; Similar to SUB1685, 53.266% identity (54.082% ungapped) in 199 aa overlap (1-197:1-198).
       0.455
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.