STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUB0909Putative carboxypeptidase. (404 aa)    
Predicted Functional Partners:
SUB0910
Putative membrane protein.
       0.798
SUB0911
Putative membrane protein.
       0.798
SUB0908
NADPH-dependent FMN reductase; C-terminus is similar to the C-terminal region of Shewanella oneidensis fumarate reductase flavoprotein subunit precursor UniProt:FRDA_SHEON (EMBL:AE015541) (596 aa) fasta scores: E()=7.7e-27, 34.972% id in 529 aa. N-terminus is similar to SUB1685, 50.794% identity (51.064% ungapped) in 189 aa overlap (1-189:1-188); and the N-terminal region of SUB1686, 50.877% identity (51.786% ungapped) in 228 aa overlap (1-224:1-228).
       0.517
SUB0907
NADPH-dependent FMN reductase; Similar to SUB1685, 53.266% identity (54.082% ungapped) in 199 aa overlap (1-197:1-198).
       0.475
dapH
Putative transferase; Catalyzes the transfer of an acetyl group from acetyl-CoA to tetrahydrodipicolinate.
  
  
 0.428
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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