STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
xerSTyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. (356 aa)    
Predicted Functional Partners:
SUB0479
DNA translocase FtsK; Belongs to the FtsK/SpoIIIE/SftA family.
 
  
 0.751
rpsI
30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
    
 
 0.745
rpmG
50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
    
 
 0.697
pcrA
Putative ATP-dependent DNA helicase.
  
  
 0.677
xerD
Tyrosine recombinase XerD; Putative tyrosine recombinase. Not involved in the cutting and rejoining of the recombining DNA molecules on dif(SL) site. Belongs to the 'phage' integrase family. XerD-like subfamily.
  
   
 0.616
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP.
     
 0.560
rpmGB
50S ribosomal protein L33 2; Belongs to the bacterial ribosomal protein bL33 family.
    
 
 0.538
SUB1129
Putative single-stranded-DNA-specific exonuclease.
 
  
 0.522
nagB
Glucosamine-6-phosphate isomerase; Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion.
      
 0.515
SUB1105
Putative protease.
  
     0.496
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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