STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUB0948ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. (355 aa)    
Predicted Functional Partners:
SUB0947
ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
0.997
SUB0949
ABC transporter ATP-binding protein.
 
 
 0.997
SUB0950
Putative lipoprotein; Similar to SUB0155, 68.091% identity (68.876% ungapped) in 351 aa overlap (1-351:1-347).
 
 
 0.984
SUB0155
Basic membrane protein; Similar to Listeria monocytogenes CD4+ T cell-stimulating antigen precursor TcsA UniProt:TCSA_LISMO (EMBL:AL591979) (357 aa) fasta scores: E()=1.4e-53, 48.179% id in 357 aa. Similar to SUB0950, 68.091% identity (68.876% ungapped) in 351 aa overlap (1-347:1-351).
 
 
 0.969
cdd
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
  
  
 0.502
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
  
  
 0.490
rbsA
Ribose transport ATP-binding protein RbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
     0.470
deoA
Thymidine phosphorylase.
     
 0.461
SUB0954
Putative methyltransferase.
       0.438
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.