STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUB0949ABC transporter ATP-binding protein. (510 aa)    
Predicted Functional Partners:
SUB0947
ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.998
SUB0948
ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.998
SUB0950
Putative lipoprotein; Similar to SUB0155, 68.091% identity (68.876% ungapped) in 351 aa overlap (1-351:1-347).
 
 
 0.991
SUB0155
Basic membrane protein; Similar to Listeria monocytogenes CD4+ T cell-stimulating antigen precursor TcsA UniProt:TCSA_LISMO (EMBL:AL591979) (357 aa) fasta scores: E()=1.4e-53, 48.179% id in 357 aa. Similar to SUB0950, 68.091% identity (68.876% ungapped) in 351 aa overlap (1-347:1-351).
 
 
 0.983
deoA
Thymidine phosphorylase.
     
 0.726
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
     
 0.713
cdd
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
  
  
 0.707
SUB0954
Putative methyltransferase.
       0.618
coaA
Pantothenate kinase.
       0.553
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.
       0.534
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.