Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SUB0972Putative membrane protein. (317 aa)    
Predicted Functional Partners:
SUB0973
Conserved hypothetical protein.
       0.814
SUB0971
Conserved hypothetical protein.
 
     0.762
SUB0975
ABC transporter ATP-binding protein.
       0.531
SUB0974
ABC transporter permease protein.
       0.529
SUB1384
Putative membrane protein.
 
     0.525
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
       0.519
ribC
Putative riboflavin biosynthesis protein; Belongs to the ribF family.
       0.481
SUB0273
Putative membrane protein (fragment); Probable gene remnant. Similar to the N-terminal regions of Streptococcus pyogenes (serotype M18) hypothetical protein spym18_2006. UniProt:Q8NZD2_STRP8 (EMBL:AE010104) (265 aa) fasta scores: E()=3.1e-05, 28.777% id in 139 aa, and Streptococcus pyogenes hypothetical protein spy1939. UniProt:Q99Y01_STRPY (EMBL:AE006617) (265 aa) fasta scores: E()=3.1e-05, 28.777% id in 139 aa. Missing C-terminal region contains transmembrane domain; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
       0.443
SUB0165
Putative fusion protein (pseudogene); PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide.
  
   
 0.420
SUB1429
Putative DNA-binding protein.
  
     0.402
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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