Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SUB0974ABC transporter permease protein. (876 aa)    
Predicted Functional Partners:
SUB0975
ABC transporter ATP-binding protein.
 
 
 0.997
SUB0683
ABC transporter ATP-binding protein.
 
 
 0.961
SUB0204
ABC transporter ATP-binding protein.
  
 
 0.953
SUB0737
ABC transporter ATP-binding protein.
  
 
 0.953
SUB0919
ABC transporter ATP-binding protein.
  
 
 0.953
SUB0576
Putative membrane protein.
 
 
 0.942
SUB0736
Putative exported protein.
  
 
 0.876
SUB0976
TetR family regulatory protein.
 
  
 0.780
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP.
     
 0.755
cinA
CinA-like protein; Belongs to the CinA family.
       0.689
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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