STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUB0976TetR family regulatory protein. (182 aa)    
Predicted Functional Partners:
SUB0974
ABC transporter permease protein.
 
  
 0.752
SUB0975
ABC transporter ATP-binding protein.
  
 
 0.635
pbp2A
Penicillin-binding protein 2a.
      
 0.522
SUB1577
Putative DNA-binding protein.
  
   
 0.474
purE
Putative phosphoribosylaminoimidazole carboxylase catalytic subunit; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).
      
 0.452
purD
Phosphoribosylamine-glycine ligase; Belongs to the GARS family.
      
 0.450
SUB0004
Putative DNA-binding protein.
  
   
 0.435
SUB0971
Conserved hypothetical protein.
 
     0.422
thiN
Putative thiamin pyrophosphokinase.
  
     0.411
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.