STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUB0980CsbD-like protein; Belongs to the UPF0337 (CsbD) family. (65 aa)    
Predicted Functional Partners:
SUB0979
Conserved hypothetical protein.
     
 0.801
SUB0981
Conserved hypothetical protein.
     
 0.692
SUB0983
Putative membrane protein.
     
 0.628
SUB0984
Putative membrane protein.
  
  
 0.579
SUB0982
Putative membrane protein.
       0.546
SUB0978
GntR family regulatory protein.
       0.537
SUB0985
Putative membrane protein.
  
  
 0.528
SUB0878
Conserved hypothetical protein.
   
    0.468
SUB0698
Putative polysaccharide export system ATP-binding protein.
  
    0.400
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.