STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUB0980CsbD-like protein; Belongs to the UPF0337 (CsbD) family. (65 aa)    
Predicted Functional Partners:
SUB0979
Conserved hypothetical protein.
     
 0.834
SUB0983
Putative membrane protein.
     
 0.780
SUB0981
Conserved hypothetical protein.
     
 0.774
SUB0982
Putative membrane protein.
       0.686
SUB0978
GntR family regulatory protein.
       0.619
SUB0984
Putative membrane protein.
  
  
 0.606
SUB0985
Putative membrane protein.
  
  
 0.559
SUB0698
Putative polysaccharide export system ATP-binding protein.
  
    0.419
SUB0697
Putative polysaccharide export ABC transporter permease protein.
  
    0.415
SUB1487
Putative membrane protein.
   
    0.401
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.