Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SUB1019Extracellular solute-binding protein; Belongs to the bacterial solute-binding protein 3 family. (282 aa)    
Predicted Functional Partners:
SUB1018
Transport system membrane protein.
 0.997
SUB1415
ABC transporter permease protein.
 0.970
SUB0365
Extracellular solute-binding protein.
  
 
 
0.928
SUB1416
Extracellular solute-binding protein.
  
  
 
0.925
SUB1414
ABC transporter ATP-binding protein; Similar to SUB1278, 50.207% identity (50.840% ungapped) in 241 aa overlap (1-241:5-242); and SUB0336, 50.607% identity (52.301% ungapped) in 247 aa overlap (1-244:5-246).
 
 0.904
SUB1020
Putative amidase.
 
   
 0.825
SUB0992
Putative amino acid ABC transporter permease protein.
 
 0.797
SUB1279
Putative amino acid ABC transporter permease protein.
 
 0.790
SUB0549
Putative amino acid ABC transporter, permease protein.
 
 0.762
SUB0548
Putative amino acid ABC transporter, permease protein.
 
 
 0.717
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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