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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUB1041Putative chain length determinant protein. (229 aa)    
Predicted Functional Partners:
wze
Tyrosine-protein kinase Wze.
 
 0.998
wzh
Protein-tyrosine phosphatase Wzh.
 
 
 0.980
SUB1038
Putative glycosyl-1-phosphate-transferase.
 
  
 0.928
wzg
Integral membrane regulatory protein Wzg.
 
  
 0.876
SUB1039
Polysaccharide biosynthesis protein.
 
  
 0.838
SUB1036
Putative galacturonic acid acetylase (fragment); Probable gene remnant. Similar to an internal region of Streptococcus pneumoniae Cap1F galacturonic acid acetylase UniProt:P96477_STRPN (EMBL:SPZ83335) (183 aa) fasta scores: E()=1e-06, 38.889% id in 72 aa.
 
  
 0.778
SUB1037
Putative UDP-glucose 4-epimerase.
  
  
 0.676
SUB1031
Putative exopolysaccharide biosynthesis protein.
  
  
 0.561
SUB1044
LysR family regulatory protein; Belongs to the LysR transcriptional regulatory family.
       0.520
SUB1028
Putative nucleotide sugar epimerase.
 
  
 0.495
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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