STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUB1044LysR family regulatory protein; Belongs to the LysR transcriptional regulatory family. (304 aa)    
Predicted Functional Partners:
SUB1041
Putative chain length determinant protein.
     
 0.743
wzh
Protein-tyrosine phosphatase Wzh.
     
 0.743
wze
Tyrosine-protein kinase Wze.
     
 0.741
SUB1039
Polysaccharide biosynthesis protein.
     
 0.562
SUB1038
Putative glycosyl-1-phosphate-transferase.
     
 0.539
wzg
Integral membrane regulatory protein Wzg.
  
    0.525
rpoA
DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.459
SUB1393
LysR family regulatory protein; Belongs to the LysR transcriptional regulatory family.
  
     0.427
SUB1037
Putative UDP-glucose 4-epimerase.
       0.411
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.