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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUB1071Putative membrane protein. (339 aa)    
Predicted Functional Partners:
SUB1072
Aldo/keto reductase family protein.
       0.565
SUB1073
Carboxymuconolactone decarboxylase family protein.
       0.522
SUB1070
Putative lipase; Q8VQP2_BACSH.
  
    0.519
SUB1074
Conserved hypothetical protein.
       0.490
SUB1076
Putative zinc-binding alcohol dehydrogenase; Similar to SUB0101, 55.714% identity (56.686% ungapped) in 350 aa overlap (1-346:1-348).
       0.490
SUB1075
MerR family regulatory protein.
       0.487
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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