Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SUB1073Carboxymuconolactone decarboxylase family protein. (107 aa)    
Predicted Functional Partners:
SUB1074
Conserved hypothetical protein.
   
 0.990
SUB1075
MerR family regulatory protein.
 
     0.799
SUB1076
Putative zinc-binding alcohol dehydrogenase; Similar to SUB0101, 55.714% identity (56.686% ungapped) in 350 aa overlap (1-346:1-348).
  
    0.762
SUB1072
Aldo/keto reductase family protein.
     
 0.731
SUB1071
Putative membrane protein.
       0.535
SUB1077
Putative short chain dehydrogenase; Possible alternative translational start site after codon 6.
  
  
 0.463
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
       0.438
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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