STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUB1074Conserved hypothetical protein. (134 aa)    
Predicted Functional Partners:
SUB1073
Carboxymuconolactone decarboxylase family protein.
   
 0.990
SUB1075
MerR family regulatory protein.
  
  
 0.829
SUB1076
Putative zinc-binding alcohol dehydrogenase; Similar to SUB0101, 55.714% identity (56.686% ungapped) in 350 aa overlap (1-346:1-348).
       0.800
SUB1072
Aldo/keto reductase family protein.
       0.711
SUB1077
Putative short chain dehydrogenase; Possible alternative translational start site after codon 6.
 
  
 0.622
SUB0808
Pyridine nucleotide-disulphide oxidoreductase family protein; N-terminal region is similar to Methanococcus jannaschii putative NADH oxidase UniProt:NAOX_METJA (EMBL:MJU67512) (463 aa) fasta scores: E()=2.2e-44, 34.667% id in 450 aa. Full length CDS is similar to Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase UniProt:Q8A513_BACTN (EMBL:AE016936) (826 aa) fasta scores: E()=2.2e-125, 47.545% id in 835 aa; Belongs to the sulfur carrier protein TusA family.
  
    0.541
SUB1071
Putative membrane protein.
       0.490
SUB1070
Putative lipase; Q8VQP2_BACSH.
  
  
 0.421
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP.
     
 0.404
SUB0906
Conserved hypothetical protein; Possible gene remnant. Similar to the C-terminal region of Bacillus halodurans BH2720 protein UniProt:Q9K9C9_BACHD (EMBL:BA000004) (295 aa) fasta scores: E()=3.2e-28, 59.701% id in 134 aa, and to the full length Rhizobium loti (Mesorhizobium loti) MLL6738 protein UniProt:Q988H6_RHILO (EMBL:BA000012) (137 aa) fasta scores: E()=2.4e-15, 42.636% id in 129 aa.
  
 
 0.401
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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