Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sclBCollagen-like surface-anchored protein. (484 aa)    
Predicted Functional Partners:
lbp
Lactoferrin binding protein; Similar to Streptococcus uberis Lbp lactoferrin binding protein UniProt:Q6U7J0 (561 aa) fasta scores: E()=1.9e-52, 62.234% id in 564 aa.
  
   
 0.797
scpA-2
C5A peptidase precursor.
  
 
 0.758
fruA
Putative fructan beta-fructosidase precursor.
   
 
 0.585
pepO
Putative endopeptidase O.
 
    0.578
SUB0479
DNA translocase FtsK; Belongs to the FtsK/SpoIIIE/SftA family.
   
 
 0.557
SUB0783
Putative FtsK/SpoIIIE family protein.
   
 
 0.557
hasA
Hyaluronan synthase.
 
   
 0.513
uidA
Putative beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
 
   
 0.460
srtA
Sortase A.
     
 0.445
smc
Putative chromosome partition protein; Required for chromosome condensation and partitioning. Belongs to the SMC family.
   
 
 0.426
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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