STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUB1173Putative ABC transport/processing ATP-binding protein (pseudogene); HMMPfam hit to PF03412, Peptidase C39 family, score 6.5e-31. (386 aa)    
Predicted Functional Partners:
SUB1174
ABC transporter, ATP-binding protein.
 
 
 0.963
SUB1004
ABC transporter ATP-binding protein.
 
 
 0.672
SUB0413
ABC transporter, ATP-binding protein.
  
 
 0.634
sagG
ABC transporter ATP-binding protein.
  
 
 0.634
SUB0296
ABC transporter, ATP-binding protein.
  
 
 0.628
SUB0501
Similar to Leuconostoc mesenteroides mesentericin y105 transport/processing ATP-binding protein MesdD UniProt:MESD_LEUME (EMBL:LMMESCDEY) (722 aa) fasta scores: E()=3.6e-125, 51.676% id in 716 aa.
  
 
 0.628
SUB1005
Putative membrane protein.
  
 
 0.628
SUB1425
ABC transporter ATP-binding protein.
  
 
 0.628
SUB1474
ABC transporter ATP-binding protein.
  
 
 0.628
SUB0177
RNA polymerase sigma factor protein; Possible alternative translational start site; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.617
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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