Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SUB1174ABC transporter, ATP-binding protein. (287 aa)    
Predicted Functional Partners:
SUB1173
Putative ABC transport/processing ATP-binding protein (pseudogene); HMMPfam hit to PF03412, Peptidase C39 family, score 6.5e-31.
 
 
 0.953
ublD
ABC transporter ATP-binding protein.
 
    0.694
sagG
ABC transporter ATP-binding protein.
 
    
0.670
SUB1003
GntR family regulatory protein.
 
  
 0.624
SUB0414
Putative membrane protein.
 
 
 0.581
SUB1663
ABC-2 type transporter membrane protein.
  
  
 0.498
ecfA
ABC transporter ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
   
0.468
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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