Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SUB1182Hypothetical protein. (100 aa)    
Predicted Functional Partners:
SUB1181
Putative copper importing ATPase.
 
     0.905
copZ
Putative transposase (fragment); Probable gene remnant. Similar to the C-terminal region of Escherichia coli putative transposase InsK for insertion sequence element IS150 UniProt:INSK_ECOLI (EMBL:ECUW76) (283 aa) fasta scores: E()=4.7e-08, 34.615% id in 130 aa.
 
   
 0.888
SUB1183
Crp family regulatory protein.
 
  
 0.831
SUB1185
Puative DNA-binding protein.
 
     0.576
SUB0206
Putative exported protein.
  
     0.482
SUB1184
Hypothetical protein; Doubtful CDS.
       0.465
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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