STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUB1199Haloacid dehalogenase-like hydrolase. (266 aa)    
Predicted Functional Partners:
SUB1198
Glycosyl hydrolase family protein.
     0.964
SUB1197
Glycosyl hydrolase family protein.
     0.930
kduD
Putative 2-deoxy-D-gluconate 3-dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 0.715
SUB1635
Putative membrane anchored protein.
 
 
   0.515
SUB1200
Putative beta-glucuronidase; Weakly similar to Scutellaria baicalensis (Baical skullcap) beta-glucuronidase SguG UniProt:Q9LRC8_SCUBA (EMBL:AB040072) (527 aa) fasta scores: E()=3.1e-09, 23.617% id in 470 aa.
       0.508
SUB1195
Putative DNA-binding protein.
       0.465
SUB0026
Putative phosphoribosylformylglycinamidine synthase protein.
  
  
 0.456
map
Putative metallopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
  
    0.451
SUB1196
Acetyltransferase (GNAT) family protein.
  
    0.451
SUB1193
Ribonuclease BN-like family protein.
  
    0.448
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.