STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SUB1200Putative beta-glucuronidase; Weakly similar to Scutellaria baicalensis (Baical skullcap) beta-glucuronidase SguG UniProt:Q9LRC8_SCUBA (EMBL:AB040072) (527 aa) fasta scores: E()=3.1e-09, 23.617% id in 470 aa. (509 aa)    
Predicted Functional Partners:
kduD
Putative 2-deoxy-D-gluconate 3-dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.707
SUB1199
Haloacid dehalogenase-like hydrolase.
       0.510
uxuA
Putative mannonate dehydratase; Catalyzes the dehydration of D-mannonate; Belongs to the mannonate dehydratase family.
       0.498
SUB1198
Glycosyl hydrolase family protein.
       0.488
uidA
Putative beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
 
     0.444
SUB1197
Glycosyl hydrolase family protein.
       0.437
uxaC
Uronate isomerase.
       0.400
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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