STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kduDPutative 2-deoxy-D-gluconate 3-dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (279 aa)    
Predicted Functional Partners:
uxaC
Uronate isomerase.
 
  
 0.863
uxuA
Putative mannonate dehydratase; Catalyzes the dehydration of D-mannonate; Belongs to the mannonate dehydratase family.
 
  
 0.851
SUB1199
Haloacid dehalogenase-like hydrolase.
 
  
 0.715
SUB1207
PfkB family carbohydrate kinase.
 
 
 0.699
uidA
Putative beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
 
  
 0.693
SUB1200
Putative beta-glucuronidase; Weakly similar to Scutellaria baicalensis (Baical skullcap) beta-glucuronidase SguG UniProt:Q9LRC8_SCUBA (EMBL:AB040072) (527 aa) fasta scores: E()=3.1e-09, 23.617% id in 470 aa.
       0.612
dgoA
Putative 2-dehydro-3-deoxy-6-phosphogalactonate aldolase.
 
  
 0.605
kduI
4-deoxy-l-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
  
  
 0.568
SUB1198
Glycosyl hydrolase family protein.
 
   
 0.552
SUB1205
GntR family regulatory protein.
 
  
 0.524
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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