STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uxuAPutative mannonate dehydratase; Catalyzes the dehydration of D-mannonate; Belongs to the mannonate dehydratase family. (348 aa)    
Predicted Functional Partners:
uxaC
Uronate isomerase.
 
  
 0.990
SUB1207
PfkB family carbohydrate kinase.
 
  
 0.942
uidA
Putative beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
 
  
 0.886
kduD
Putative 2-deoxy-D-gluconate 3-dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 0.851
SUB1602
Putative sugar kinase.
    
 0.836
SUB0199
6-phosphogluconate dehydrogenase family protein; Similar to the N-terminal regions of Saccharomyces cerevisiae (Baker's yeast) GND2 6-phosphogluconate dehydrogenase, decarboxylating 2 UniProt:6PG2_YEAST (492 aa) fasta scores: E()=3e-24, 37.209% id in 301 aa, and Escherichia coli 6-phosphogluconate dehydrogenase, decarboxylating Gnd UniProt:6PG9_ECOLI (468 aa) fasta scores: E()=3.1e-22, 36.333% id in 300 aa.
    
 0.817
dgoA
Putative 2-dehydro-3-deoxy-6-phosphogalactonate aldolase.
 
   
 0.811
RPE
Putative ribulose-phosphate 3-epimerase; Similar to the C-terminal region of Spinacia oleracea (Spinach) ribulose-phosphate 3-epimerase, chloroplast precursor RPE (ec 5.1.3.1) (pentose-5-phosphate 3-epimerase) UniProt:RPE_SPIOL (EMBL:AF070941) (285 aa) fasta scores: E()=2.9e-21, 38.614% id in 202 aa.
     
  0.800
rpiA
Ribose 5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
     
  0.800
rpe
Putative ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
     
  0.800
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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