Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SUB1374Conserved hypothetical protein. (104 aa)    
Predicted Functional Partners:
SUB1373
Conserved hypothetical protein; Belongs to the UPF0374 family.
 
     0.817
SUB1135
Putative exported protein.
  
     0.688
recX
RecX family protein; Modulates RecA activity; Belongs to the RecX family.
       0.659
SUB1371
Putative RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.601
SUB0176
Putative exported protein.
  
     0.589
SUB0617
Putative phosphoesterase.
 
   
 0.581
SUB1085
Putative membrane protein.
  
     0.510
SUB1083
Conserved hypothetical protein.
 
     0.477
SUB0561
Putative N-acetylmuramoyl-L-alanine amidase.
  
     0.467
SUB1282
Mut/NUDIX family protein; Belongs to the Nudix hydrolase family.
  
     0.456
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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