Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
comFCPutative late competence protein. (224 aa)    
Predicted Functional Partners:
comFA
Putative late competence protein.
  
  
 0.963
SUB0926
SMF family protein.
 
 
 0.902
comEC
Putative competence protein.
 
  
 0.819
hpf
Sigma 54 modulation protein / S30EA ribosomal protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
  
    0.742
SUB1378
Conserved hypothetical protein.
       0.727
comEA
Putative competence protein.
 
  
 0.688
SUB0119
Putative competence protein.
 
  
 0.634
cysM
Putative cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
       0.633
SUB0118
Putative competence protein.
 
  
 0.568
SUB1443
Sugar phosphotransferase system (PTS), IIC component (fragment); Probable gene remnant. Similar to Lactobacillus casei LacE PTS system, lactose-specific IIBC component UniProt:PTLB_LACCA (EMBL:LCLACE) (577 aa) fasta scores: E()=1.8e-05, 23.342% id in 407 aa. CDS contains nonsense mutations after codon 86 (ochre) and 247 (opal) and lacks appropriate start and stop codons.
  
    0.547
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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