Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pbpXPutative penicillin binding protein 2x. (750 aa)    
Predicted Functional Partners:
pbp1A
Putative penicillin-binding protein 1A.
 
 
 0.992
pbp2A
Penicillin-binding protein 2a.
 
 
 0.992
pbp1B
Putative penicillin-binding protein 1B.
 
 
 0.986
ftsW
Putative cell division protein; Belongs to the SEDS family.
 
 
 0.984
divIB
Putative cell division protein; Cell division protein that may be involved in stabilizing or promoting the assembly of the division complex; Belongs to the FtsQ/DivIB family. DivIB subfamily.
 
 
 0.971
ftsL
Putative cell division protein; Essential cell division protein; Belongs to the FtsL family.
  
 
 0.967
mraY
phospho-N-acetylmuramoyl-pentapeptide-transfera se; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.
 
  
 0.963
SUB0351
Putative D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
  
 
 0.961
SUB0350
Putative D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
  
 
 0.936
mraW
S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
 
  
 0.933
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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