Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SUB1424 | SUB1425 | SUB1424 | SUB1425 | Putative membrane protein. | ABC transporter ATP-binding protein. | 0.927 |
SUB1424 | SUB1426 | SUB1424 | SUB1426 | Putative membrane protein. | Conserved hypothetical protein. | 0.774 |
SUB1424 | ftsL | SUB1424 | SUB1420 | Putative membrane protein. | Putative cell division protein; Essential cell division protein; Belongs to the FtsL family. | 0.502 |
SUB1424 | mraW | SUB1424 | SUB1421 | Putative membrane protein. | S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. | 0.502 |
SUB1424 | mraY | SUB1424 | SUB1418 | Putative membrane protein. | phospho-N-acetylmuramoyl-pentapeptide-transfera se; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.502 |
SUB1424 | pbpX | SUB1424 | SUB1419 | Putative membrane protein. | Putative penicillin binding protein 2x. | 0.617 |
SUB1424 | proA | SUB1424 | SUB1422 | Putative membrane protein. | Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family. | 0.624 |
SUB1424 | proB | SUB1424 | SUB1423 | Putative membrane protein. | Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate. | 0.641 |
SUB1425 | SUB1424 | SUB1425 | SUB1424 | ABC transporter ATP-binding protein. | Putative membrane protein. | 0.927 |
SUB1425 | SUB1426 | SUB1425 | SUB1426 | ABC transporter ATP-binding protein. | Conserved hypothetical protein. | 0.754 |
SUB1425 | ftsL | SUB1425 | SUB1420 | ABC transporter ATP-binding protein. | Putative cell division protein; Essential cell division protein; Belongs to the FtsL family. | 0.466 |
SUB1425 | mraW | SUB1425 | SUB1421 | ABC transporter ATP-binding protein. | S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. | 0.461 |
SUB1425 | mraY | SUB1425 | SUB1418 | ABC transporter ATP-binding protein. | phospho-N-acetylmuramoyl-pentapeptide-transfera se; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.461 |
SUB1425 | pbpX | SUB1425 | SUB1419 | ABC transporter ATP-binding protein. | Putative penicillin binding protein 2x. | 0.461 |
SUB1425 | proA | SUB1425 | SUB1422 | ABC transporter ATP-binding protein. | Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family. | 0.604 |
SUB1425 | proB | SUB1425 | SUB1423 | ABC transporter ATP-binding protein. | Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate. | 0.613 |
SUB1426 | SUB1424 | SUB1426 | SUB1424 | Conserved hypothetical protein. | Putative membrane protein. | 0.774 |
SUB1426 | SUB1425 | SUB1426 | SUB1425 | Conserved hypothetical protein. | ABC transporter ATP-binding protein. | 0.754 |
SUB1426 | ftsL | SUB1426 | SUB1420 | Conserved hypothetical protein. | Putative cell division protein; Essential cell division protein; Belongs to the FtsL family. | 0.453 |
SUB1426 | mraW | SUB1426 | SUB1421 | Conserved hypothetical protein. | S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. | 0.453 |
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