Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
lacT1Transcription antiterminator LacT 1; Similar to SUB0797, 49.097% identity (49.097% ungapped) in 277 aa overlap (1-277:1-277). (277 aa)    
Predicted Functional Partners:
SUB0830
Transcription antiterminator (pseudogene); HMMPfam hit to PF00874, PRD domain, score 2.1e-14.
 
 
 0.860
lacF1
Putative lactose-specific phosphotransferase system (PTS), IIBC component 1 (pseudogene); HMMPfam hit to PF02378, Phosphotransferase system, EIIC, score 9.8e-43.
 
  
 0.831
scrA
Putative sucrose-specific phosphotransferase system (PTS), IIABC component.
 
 
 0.816
SUB1763
Sugar phosphotransferase system (PTS), IIABC component.
 
 
 0.751
SUB0236
Putative glucose-specific phosphotransferase system (PTS), IIABC component.
 
 
 0.644
lacE2
Putative lactose-specific phosphotransferase system (PTS), IIBC component 2; Similar to SUB1450, 61.717% identity (62.050% ungapped) in 559 aa overlap (1-558:1-557).
 
  
 0.547
SUB1458
Sugar phosphotransferase system (PTS), galactitol-specific family, IIC component.
 
     0.531
lacD1
Tagatose 1,6-diphosphate aldolase 1; Similar to SUB0040, 97.214% identity (97.214% ungapped) in 323 aa overlap (3-325:4-326); and SUB0796, 75.460% identity (75.692% ungapped) in 326 aa overlap (1-325:1-326); Belongs to the aldolase LacD family.
     
 0.528
fruA-2
Putative fructose-specific phosphotransferase system (PTS), IIABC component.
 
  
 0.511
lacA1
Galactose-6-phosphate isomerase LacA subunit 1; Similar to SUB0793, 74.286% identity (74.286% ungapped) in 140 aa overlap (1-140:1-140).
       0.508
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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