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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lacX1Aldose 1-epimerase 1; Similar to SUB0802, 48.986% identity (49.828% ungapped) in 296 aa overlap (3-295:6-299). (298 aa)    
Predicted Functional Partners:
lacD1
Tagatose 1,6-diphosphate aldolase 1; Similar to SUB0040, 97.214% identity (97.214% ungapped) in 323 aa overlap (3-325:4-326); and SUB0796, 75.460% identity (75.692% ungapped) in 326 aa overlap (1-325:1-326); Belongs to the aldolase LacD family.
  
  
 0.822
lacB1
Galactose-6-phosphate isomerase LacB subunit 1; Similar to SUB0794, 77.778% identity (77.778% ungapped) in 171 aa overlap (1-171:1-171).
  
  
 0.804
lacC1
Tagatose-6-phosphate kinase 1; Similar to SUB0795, 61.736% identity (61.935% ungapped) in 311 aa overlap (1-311:1-310); Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
  
  
 0.803
lacA1
Galactose-6-phosphate isomerase LacA subunit 1; Similar to SUB0793, 74.286% identity (74.286% ungapped) in 140 aa overlap (1-140:1-140).
  
  
 0.776
lacF1
Putative lactose-specific phosphotransferase system (PTS), IIBC component 1 (pseudogene); HMMPfam hit to PF02378, Phosphotransferase system, EIIC, score 9.8e-43.
  
  
 0.530
SUB1458
Sugar phosphotransferase system (PTS), galactitol-specific family, IIC component.
  
    0.530
SUB1460
Sugar phosphotransferase system (PTS), IIA component.
     
 0.521
SUB1459
Sugar phosphotransferase system (PTS), IIB component.
  
    0.509
lacE2
Putative lactose-specific phosphotransferase system (PTS), IIBC component 2; Similar to SUB1450, 61.717% identity (62.050% ungapped) in 559 aa overlap (1-558:1-557).
  
  
 0.489
lacT1
Transcription antiterminator LacT 1; Similar to SUB0797, 49.097% identity (49.097% ungapped) in 277 aa overlap (1-277:1-277).
       0.485
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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