STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUB1508Putative D-alanyl-D-alanine carboxypeptidase. (248 aa)    
Predicted Functional Partners:
pbpX
Putative penicillin binding protein 2x.
  
 
 0.926
pbp2A
Penicillin-binding protein 2a.
     
 0.912
SUB0350
Putative D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
    
 0.907
SUB0351
Putative D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
    
 0.907
pbp1B
Putative penicillin-binding protein 1B.
     
 0.905
pbp1A
Putative penicillin-binding protein 1A.
     
 0.905
SUB1507
Putative N-acetyl-muramidase.
     
 0.823
SUB1509
Phosphoglycerate mutase family protein.
       0.800
hrcA
Heat-inducible transcription repressor HrcA; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons.
       0.595
ddlA
D-alanine--D-alanine ligase; Cell wall formation.
 
   
 0.540
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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