Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SUB1529Putative aminotransferase. (404 aa)    
Predicted Functional Partners:
SUB1010
Putative branched-chain-amino-acid aminotransferase.
  
 
 0.916
gdh
NADP-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 
 0.915
ldh
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
  
 0.910
pfl
Formate acetyltransferase.
     
 0.858
SUB0825
NAD-dependent malic enzyme.
  
 0.829
pyk
Putative pyruvate kinase; Belongs to the pyruvate kinase family.
   
 0.829
pdhB
Putative pyruvate dehydrogenase E1 component, beta subunit.
   
 0.828
glr
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
  
 
 0.820
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
    
 0.819
pdhA
Putative pyruvate dehydrogenase E1 component, alpha subunit.
  
 
 0.810
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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