Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SUB1582RpiR family regulatory protein. (295 aa)    
Predicted Functional Partners:
SUB1541
RpiR family regulatory protein.
  
   
 0.828
SUB1650
Putative transcription regulator.
  
     0.753
SUB0806
Putative integrase (pseudogene); HMMPfam hit to PF00589, Phage integrase family, score 1.7e-10.
 
  
 0.619
SUB1583
Conserved hypothetical protein.
     
 0.557
SUB1580
Putative membrane protein.
       0.528
SUB1581
Putative membrane protein.
       0.528
SUB1579
Similar to SUB0837, 50.615% identity (53.118% ungapped) in 488 aa overlap (9-481:5-484); and SUB0905, 47.658% identity (49.576% ungapped) in 491 aa overlap (1-484:1-479); and SUB0309, 46.856% identity (49.784% ungapped) in 493 aa overlap (9-484:4-484); and SUB0841, 53.347% identity (55.195% ungapped) in 478 aa overlap (9-481:6-472); and SUB0834, 47.129% identity (51.073% ungapped) in 505 aa overlap (6-484:3-494); and SUB0200, 45.473% identity (48.253% ungapped) in 486 aa overlap (5-479:3-471); Belongs to the glycosyl hydrolase 1 family.
  
    0.484
SUB0236
Putative glucose-specific phosphotransferase system (PTS), IIABC component.
  
  
 0.415
SUB0830
Transcription antiterminator (pseudogene); HMMPfam hit to PF00874, PRD domain, score 2.1e-14.
  
  
 0.415
scrA
Putative sucrose-specific phosphotransferase system (PTS), IIABC component.
  
  
 0.415
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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