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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
citFPutative citrate lyase alpha subunit. (510 aa)    
Predicted Functional Partners:
citX
Puatative apo-citrate lyase phosphoribosyl-dephospho-CoA transferase.
 
  
 0.990
citD
Putative citrate lyase beta subunit (pseudogene); Covalent carrier of the coenzyme of citrate lyase.
 
 
 0.980
SUB1584
Putative carboxylase subunit.
  
  
 0.845
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
   
    0.601
nanH
Putative N-acetylneuraminate lyase.
   
    0.601
malP
Sodium-dependent malate transporter.
 
   
 0.523
fruA-2
Putative fructose-specific phosphotransferase system (PTS), IIABC component.
   
  
 0.496
SUB0825
NAD-dependent malic enzyme.
  
  
 0.423
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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