STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
idnOPutative gluconate 5-dehydrogenase. (268 aa)    
Predicted Functional Partners:
kduI
4-deoxy-l-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
  
 0.877
kdgT
2-keto-3-deoxygluconate permease.
     
 0.761
SUB1602
Putative sugar kinase.
 
 
 0.656
kgdA
Putative transposase (fragment); Predicted helix-turn-helix motif with score 996.000, SD 2.58 at aa 24-45, sequence VSWTQLETQFGVNLSNLKYTIR.
  
  
 0.619
SUB1603
Conserved hypothetical protein.
  
  
 0.616
SUB0201
Putative gluconokinase.
  
 
 0.553
fabD
Putative malonyl CoA-acyl carrier protein transacylase.
 
 
 0.518
SUB1458
Sugar phosphotransferase system (PTS), galactitol-specific family, IIC component.
  
    0.487
srlA
Putative glucitol/sorbitol-specific phosphotransferase system (PTS), IIC2 component.
  
    0.466
gutM
Glucitol operon activator protein.
  
  
 0.466
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.