Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
kdgT2-keto-3-deoxygluconate permease. (347 aa)    
Predicted Functional Partners:
kgdA
Putative transposase (fragment); Predicted helix-turn-helix motif with score 996.000, SD 2.58 at aa 24-45, sequence VSWTQLETQFGVNLSNLKYTIR.
 
  
 0.831
idnO
Putative gluconate 5-dehydrogenase.
     
 0.758
kduI
4-deoxy-l-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.743
SUB1602
Putative sugar kinase.
  
  
 0.657
SUB1603
Conserved hypothetical protein.
  
    0.579
dgoA
Putative 2-dehydro-3-deoxy-6-phosphogalactonate aldolase.
  
  
 0.571
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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