STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kduI4-deoxy-l-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family. (281 aa)    
Predicted Functional Partners:
idnO
Putative gluconate 5-dehydrogenase.
 
  
 0.876
kdgT
2-keto-3-deoxygluconate permease.
 
   
 0.743
kduD
Putative 2-deoxy-D-gluconate 3-dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
 0.661
kgdA
Putative transposase (fragment); Predicted helix-turn-helix motif with score 996.000, SD 2.58 at aa 24-45, sequence VSWTQLETQFGVNLSNLKYTIR.
  
  
 0.579
SUB1602
Putative sugar kinase.
  
  
 0.576
SUB0338
Putative membrane protein.
   
    0.567
uxaC
Uronate isomerase.
 
   
 0.543
SUB1603
Conserved hypothetical protein.
     
 0.501
SUB1607
LacI family regulatory protein.
  
  
 0.491
SUB0573
Phosphate transport system protein; Plays a role in the regulation of phosphate uptake.
   
    0.439
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.