Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SUB1635Putative membrane anchored protein. (878 aa)    
Predicted Functional Partners:
SUB0150
Conserved hypothetical protein.
 
     0.777
SUB1737
Putative exported protein.
  
     0.771
SUB0709
Putative membrane protein.
 
   
 0.750
SUB1429
Putative DNA-binding protein.
  
     0.745
SUB0012
Putative exported protein.
  
     0.744
SUB0973
Conserved hypothetical protein.
 
     0.742
SUB0547
Conserved hypothetical protein.
  
     0.736
SUB0576
Putative membrane protein.
  
     0.725
purR
Putative pur operon repressor.
  
    0.720
SUB1212
Putative lipoprotein.
 
     0.719
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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