STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUB1722L-ribulose 5-phosphate 4-epimerase. (237 aa)    
Predicted Functional Partners:
SUB1723
Putative hexulose-6-phosphate isomerase.
 
 0.996
RPE
Putative ribulose-phosphate 3-epimerase; Similar to the C-terminal region of Spinacia oleracea (Spinach) ribulose-phosphate 3-epimerase, chloroplast precursor RPE (ec 5.1.3.1) (pentose-5-phosphate 3-epimerase) UniProt:RPE_SPIOL (EMBL:AF070941) (285 aa) fasta scores: E()=2.9e-21, 38.614% id in 202 aa.
    
 0.914
rpe
Putative ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
    
 0.914
SUB1724
Putative hexulose-6-phosphate synthase.
 
  
 0.887
uxaC
Uronate isomerase.
    
 0.841
uidA
Putative beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
  
 
 0.819
SUB1725
Sugar phosphotransferase system (PTS), IIA component.
  
  
 0.685
SUB1726
Sugar phosphotransferase system (PTS), lactose/cellobiose-specific family, IIB component.
 
  
 0.674
SUB0201
Putative gluconokinase.
 
  
 0.621
SUB1727
Putative sugar-specific permease, SgaT/UlaA family.
 
  
 0.603
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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