Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SUB1730Putative surface-anchored protein. (369 aa)    
Predicted Functional Partners:
SUB0241
Internal region is similar to Escherichia coli 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor CpdB UniProt:CN16_ECOLI (EMBL:ECCPDB) (647 aa) fasta scores: E()=5.6e-90, 46.809% id in 611 aa.
      
 0.573
leuS
leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.503
SUB1370
Putative zinc carboxypeptidase; Possible surface-anchored protein. CDS is orthologous to Streptococcal proteins which have a sortase-processing, cell wall-anchor motif (i.e. LPXTG), however the CDS lacks such a motif.
      
 0.466
nusG
Transcription antitermination factor; Participates in transcription elongation, termination and antitermination.
       0.454
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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