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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUB1730Putative surface-anchored protein. (369 aa)    
Predicted Functional Partners:
leuS
leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.497
nusG
Transcription antitermination factor; Participates in transcription elongation, termination and antitermination.
       0.449
fruA
Putative fructan beta-fructosidase precursor.
      
 0.448
SUB0207
Putative surface-anchored protein.
      
 0.448
SUB0241
Internal region is similar to Escherichia coli 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor CpdB UniProt:CN16_ECOLI (EMBL:ECCPDB) (647 aa) fasta scores: E()=5.6e-90, 46.809% id in 611 aa.
      
 0.448
SUB1370
Putative zinc carboxypeptidase; Possible surface-anchored protein. CDS is orthologous to Streptococcal proteins which have a sortase-processing, cell wall-anchor motif (i.e. LPXTG), however the CDS lacks such a motif.
      
 0.447
sclB
Collagen-like surface-anchored protein.
      
 0.442
SUB0888
Conserved hypothetical protein (fragment); PS00014 Endoplasmic reticulum targeting sequence.
      
 0.441
srtA
Sortase A.
      
 0.440
SUB0826
Putative surface-anchored subtilase family protein.
      
 0.430
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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