Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SUB1750Conserved hypothetical protein. (202 aa)    
Predicted Functional Partners:
SUB1749
Putative dioxygenase.
 
  
 0.913
SUB1748
Putative dioxygenase.
 
  
 0.900
SUB1751
Putative phospholipase/carboxylesterase.
 
     0.888
SUB1747
Putative membrane protein.
 
     0.610
SUB1746
Conserved hypothetical protein; Possible alternative translational start sites.
       0.505
SUB1360
NADH:flavin oxidoreductase / NADH oxidase family protein.
  
  
 0.407
SUB0302
Conserved hypothetical protein.
 
  
 0.402
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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