Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SUB1776Conserved hypothetical protein; Belongs to the UPF0297 family. (89 aa)    
Predicted Functional Partners:
SUB1775
Putative Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.
 
    0.969
SUB1774
Conserved hypothetical protein; Belongs to the UPF0473 family.
  
  
 0.857
SUB1125
Conserved hypothetical protein.
  
     0.722
SUB1777
Regulatory protein Spx; spxA; Belongs to the ArsC family.
  
    0.700
SUB0894
Putative DNA-binding protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
 
   
 0.693
SUB1468
Conserved hypothetical protein.
  
   
 0.678
SUB1773
Putative membrane protein.
       0.678
whiA
Conserved hypothetical protein; Involved in cell division and chromosome segregation.
  
     0.667
SUB0332
Conserved hypothetical protein.
  
  
 0.652
polC
DNA polymerase III PolC-type; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
  
     0.640
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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