Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SUB1799Putative DNA-binding membrane protein (pseudogene); Predicted helix-turn-helix motif with score 2592.000, SD 8.02 at aa 16-37, sequence LSQEDLAEKIYVSRQTISNWEN. (280 aa)    
Predicted Functional Partners:
SUB1675
Putative sensor kinase.
  
     0.556
SUB0598
Glycosyl hydrolases family protein.
 
     0.549
SUB0411
PAP2 superfamily protein.
  
  
 0.542
lysS
lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
       0.443
SUB0594
Phosphoglycerate mutase family protein.
       0.443
SUB0595
Putative membrane protein.
       0.443
SUB0596
Conserved hypothetical protein; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.
       0.443
SUB0597
Putative membrane protein.
       0.443
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
       0.438
SUB1674
Putative sensor kinase (pseudogene); Similar to Streptococcus agalactiae histidine kinase RgfC UniProt:Q8L360_STRAG (EMBL:AF390107) (444 aa) fasta scores: E()=4.5e-24, 26.742% id in 445 aa. CDS contains a frameshift after codon 157.
  
     0.425
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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