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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUB1799Putative DNA-binding membrane protein (pseudogene); Predicted helix-turn-helix motif with score 2592.000, SD 8.02 at aa 16-37, sequence LSQEDLAEKIYVSRQTISNWEN. (280 aa)    
Predicted Functional Partners:
SUB1675
Putative sensor kinase.
  
     0.556
SUB1674
Putative sensor kinase (pseudogene); Similar to Streptococcus agalactiae histidine kinase RgfC UniProt:Q8L360_STRAG (EMBL:AF390107) (444 aa) fasta scores: E()=4.5e-24, 26.742% id in 445 aa. CDS contains a frameshift after codon 157.
  
     0.425
SUB0498
Response regulator protein.
  
     0.415
SUB1671
Putative sensor kinase.
  
     0.410
SUB1135
Putative exported protein.
  
     0.408
SUB1676
Sensor histidine kinase.
  
     0.401
fasA
Response regulator protein.
  
     0.400
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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