Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SUB1832Putative DNA-binding phage protein. (112 aa)    
Predicted Functional Partners:
SUB1831
Putative DNA-binding phage protein; Similar to SUB0222, 85.393% identity (85.393% ungapped) in 89 aa overlap (1-89:1-89).
       0.799
SUB1832A
Putative phage membrane protein; Similar to SUB0223, 82.540% identity (82.540% ungapped) in 63 aa overlap (1-63:1-63).
       0.768
SUB1834
Hypothetical phage protein; Similar to SUB0224, 74.138% identity (74.138% ungapped) in 58 aa overlap (1-58:1-58).
       0.768
SUB1835
Hypothetical phage protein.
       0.768
SUB1830
Hypothetical phage protein.
       0.625
SUB1829
Hypothetical phage protein.
       0.563
SUB1837
Hypothetical phage protein.
       0.460
SUB1828
Hypothetical phage protein.
       0.429
SUB1827
Hypothetical phage protein.
       0.424
SUB1836
Hypothetical phage protein; Similar to SUB0227, 75.000% identity (75.000% ungapped) in 96 aa overlap (1-96:1-96).
       0.406
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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