Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SUB1840Phage integrase; Similar to SUB0231, 49.487% identity (50.923% ungapped) in 390 aa overlap (1-388:1-381); Belongs to the 'phage' integrase family. (388 aa)    
Predicted Functional Partners:
SUB1839
Putative DNA-binding phage protein.
 
     0.590
SUB1818
Conserved hypothetical protein (fragment); Repeat region flanking putative prophage. Contains 3-prime region of 30S ribosomal protein S4 CDS.
     
 0.554
SUB1837
Hypothetical phage protein.
 
     0.430
comFC
Putative late competence protein.
   
    0.407
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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