STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF05627.1Glycine oxidase. (343 aa)    
Predicted Functional Partners:
SDF79355.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
  
 0.975
SDF75577.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
  
 0.975
SDG82754.1
Glutamate synthase (NADPH) large subunit.
  
 
 0.801
SDF05577.1
tRNA U34 5-methylaminomethyl-2-thiouridine-forming methyltransferase MnmC.
 
     0.771
SDF79322.1
Sarcosine oxidase subunit delta.
  
 0.760
SDF75537.1
Sarcosine oxidase subunit delta.
  
  0.735
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
 
 0.728
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
  
    0.720
SDF05541.1
Permease of the drug/metabolite transporter (DMT) superfamily.
       0.716
SDG87914.1
Dimethylglycine dehydrogenase; Belongs to the GcvT family.
   
  0.640
Your Current Organism:
Sulfitobacter delicatus
NCBI taxonomy Id: 218672
Other names: ATCC BAA-321, DSM 16477, KMM 3584, LMG 20554, LMG:20554, S. delicatus, Sulfitobacter delicae, Sulfitobacter delicatus Ivanova et al. 2004, Sulfitobacter deliciae
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