STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF11193.1TRAP-type C4-dicarboxylate transport system, small permease component. (212 aa)    
Predicted Functional Partners:
SDF11246.1
TRAP transporter, DctM subunit.
 
  0.989
SDF11155.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
 
  0.967
SDF11289.1
Nucleotide-binding universal stress protein, UspA family.
 
     0.949
SDF11330.1
Maleate isomerase.
 
     0.835
SDF00251.1
TRAP transporter, DctM subunit.
  
  0.805
SDF13474.1
TRAP transporter, DctM subunit.
  
  0.805
SDF78466.1
TRAP transporter, DctM subunit.
  
  0.805
SDF83025.1
TRAP transporter, DctM subunit.
  
  0.805
SDG29525.1
TRAP transporter, DctM subunit.
  
  0.805
SDG29948.1
TRAP transporter, DctM subunit.
  
  0.805
Your Current Organism:
Sulfitobacter delicatus
NCBI taxonomy Id: 218672
Other names: ATCC BAA-321, DSM 16477, KMM 3584, LMG 20554, LMG:20554, S. delicatus, Sulfitobacter delicae, Sulfitobacter delicatus Ivanova et al. 2004, Sulfitobacter deliciae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.