STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF50737.1Uncharacterized membrane protein. (100 aa)    
Predicted Functional Partners:
SDF50778.1
Hypothetical protein.
 
  
 0.991
SDF50841.1
Putative DNA-binding domain-containing protein.
 
  
 0.984
SDF50884.1
Putative oxidoreductase.
 
  
 0.951
SDF56116.1
Hemolysin-type calcium-binding repeat-containing protein.
   
    0.852
SDG73141.1
Type IV secretion system protein VirB3.
   
    0.823
SDH00551.1
Type IV secretion system protein VirB3.
   
    0.823
SDG09182.1
Type IV secretion system protein VirB4.
   
    0.684
SDG73178.1
Type IV secretion system protein VirB4.
   
    0.684
SDH00504.1
Type IV secretion system protein VirB4.
   
    0.684
SDG73297.1
Type IV secretion system protein VirB8.
   
    0.657
Your Current Organism:
Sulfitobacter delicatus
NCBI taxonomy Id: 218672
Other names: ATCC BAA-321, DSM 16477, KMM 3584, LMG 20554, LMG:20554, S. delicatus, Sulfitobacter delicae, Sulfitobacter delicatus Ivanova et al. 2004, Sulfitobacter deliciae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.